Research Article |
Corresponding author: David Tarkhnishvili ( david_tarkhnishvili@iliauni.edu.ge ) Academic editor: Levan Mumladze
© 2024 David Tarkhnishvili, Mariami Todua, Giorgi Iankoshvili.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Tarkhnishvili D, Todua M, Iankoshvili G (2024) Which species of water frogs inhabit ponds of the Caucasus? Taxonomic mess with Pelophylax ridibundus species complex. Caucasiana 3: 31-39. https://doi.org/10.3897/caucasiana.3.e117215
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Two nominal species of water frogs of the genus Pelophylax, P. ridibundus and P. bedriagae, are found in Central and Eastern Europe, the Middle East, Western Asia, Western Kazakhstan, and Siberia. So far, the taxonomic status of Pelophylax in most of the Caucasus has remained unknown. Sequencing of the Cytochrome Oxidase 1 mitochondrial gene attributed the frogs throughout Georgia to the P. ‘bedriagae’ lineage, bringing them very close to the specimens from Kazakhstan and Greece. Simultaneously, the current nomenclature of water frogs appears to be formally incorrect since western Kazakhstan, the type locality for P. ridibundus, has frogs genetically closer to nominal P. bedriagae, than to nominal P. ridibundus from Europe. Because there is no evidence that the frogs from Central Europe, Kazakhstan, and the Caucasus, as well as from Anatolia and Iran, are biological species with individual evolutionary pathways, we suggest a conservative approach and synonymize nominal P. bedriagae from most of West Asia with P. ridibundus.
mitochondrial DNA, Pelophylax ridibundus, Pelophylax bedriagae, water frog taxonomy
During most of the XX century, the Western Palaearctic water frogs were attributed to two species: small-bodied Rana lessonae from Western Europe and large-bodied Rana ridibunda from Central and Eastern Europe, Central and Western Asia, and Northern Africa; the hybrid form between R. ridibunda and R. lessonae, R. esculenta, was originally described as a separate species (
Samples (toe phalanges) of frogs were collected from five Georgian locations (Fig.
DNA purification was processed using the Quick-DNA Miniprep Plus Kit (Zymo Research). Partial sequences of cytochrome oxidase subunit I (COI) were amplified by polymerase chain reaction (PCR) using the primer pairs LCOI490-JJ and HCO2198-JJ (
PCR amplicons were visualized on 1% agarose gels using 1.7 μl of PCR product. The unpurified PCR products were sequenced in both directions at the Beijing Genomics Institute (Hong Kong, CN) using the amplification primers. Sequence analysis was performed using Geneious Prime 2022.1.1 (http://www.geneious.com). Extracted DNA was deposited in the scientific collections of Ilia State University, Tbilisi, Georgia, and aliquots will be deposited at the LIB Biobank at Museum Koenig, Bonn, Germany. At the same time, the sequences have been submitted to Barcode of Life Data System (BOLD) databases. The newly obtained DNA barcodes of COI sequences were checked out against the BOLD systems and BLAST database (http://www.boldsystems.org/, https://blast.ncbi.nlm.nih.gov/Blast.cgi).
In the analysis, we used six obtained CO1 mitochondrial gene sequences of Pelophylax from throughout Georgia and 89 sequences of water frogs downloaded from NCBI GenBank (
Pairwise genetic distances between Georgian samples and green frogs from throughout West Eurasia, based on the analysis of Cytochrome Oxidase 1 sequences (COI), are shown in Suppl. material
The Maximum Likelihood tree of the obtained haplotypes is shown in Fig.
Several publications tried to infer the phylogeny of Pelophylax, based on the analysis of mitochondrial genes (
The situation with these two species remained unclear. There are no fixed morphological characters that could distinguish between P. ridibundus and P. bedriagae (
Simultaneously, the latter clade contains two reciprocally monophyletic haplogroups, one from the Balkans, Anatolia, the Caucasus, and Western Kazakhstan, and another one from Central Europe. As
Our results support the reciprocal monophyly of mitochondrial haplogroups of marsh frogs from (1) the Balkans, the Caucasus, Western and Central Asia, and (2) Central Europe. However, we suggest that the name Pelophylax bedriagae can only be applied to the frogs from the Levant, which Schneider et al. described as a separate species back in 1992. Applying this name to the frogs from most of Anatolia, the Caucasus, and Central Asia, including Kazakhstan, is incorrect because (a) western Kazakhstan, and specifically the Atyrau district, is Terra Typica for P. ridibundus (
In conclusion, the presence of distinct mitochondrial haplogroups of marsh frogs from the north-west and south-east of their western Eurasian range reflects a long period of isolation between the European and West Asian or Balkan populations. However, it is not sufficient to attribute them to different species. There are no vocalization differences between the frogs from Kazakhstan, the Caucasus, and Central Europe, and no data is available for those Anatolian populations, which belong to the mitochondrial lineage widespread in Western Asia and the Caucasus. Nuclear haplotypes more common in Central Europe and Anatolia are admixed in the Terra Typica of P. ridibundus and are occasionally found in the same population of Western Kazakhstan; finally, there is no evidence of reproductive isolation between these populations. The proportion of the sequence differences cannot be taken as evidence of the effective isolation of "different evolutionary pathways" (in the sense of
We appreciate Armen Seropian and Lasha-Giorgi Japaridze for collecting the samples, and four anonymous reviewers, which made valuable comments on the first version of the Manuscript.
The authors have declared that no competing interests exist.
No ethical statement was reported.
The study was funded within the framework of the project by the Federal Ministry of Education and Research of Germany (BMBF) under grant number 01DK20014A (CaBOL).
GI planned field work and collected samples, MT performed genetic analysis and tree building, DT wrote the text with assistance of GI and MT, all authors participated in final data analysis.
David Tarkhnishvili https://orcid.org/0000-0003-1479-9880
Mariami Todua https://orcid.org/0000-0003-1870-3030
Giorgi Iankoshvili https://orcid.org/0000-0002-0429-1488
All of the data that support the findings of this study are available in the main text or Supplementary Information.
Samples and downloaded sequences used in the study
Data type: GenBank identification numbers
Explanation note: Samples and downloaded sequences (NCBI identification numbers) used in the study.
Genetic distances (proportion of differences) between the studied sequences
Data type: Genetic distance matrix
Explanation note: Genetic distances (proportion of differences) between the studied sequences of CO1 mitochondrial gene of Pelophylax.